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AnnotationForge (version 1.12.0)
Code for Building Annotation Database Packages
Description
Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.
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1.14.2
1.12.0
1.10.1
1.8.2
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Version
1.12.0
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in AnnotationForge (1.12.0)
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makeOrgPackageFromNCBI
Making an organism package from annotations available from NCBI.
getProbeData_1lq
Read a 1lq file for an Affymetrix genechip
generateSeqnames.db
Generates the seqnames.db package and database
makeInpDb
Builds an individual DB from online files at inparanoid that is in turn meant for generating Inparanoid 8 based objects.
makeChipPackage
Making a chip package from annotations available from data.frame of probes mapped to gene IDs and an existing org package.
available.db0pkgs
available.db0pkgs
AnnDbPkg-maker
Creates an SQLite-based annotation package
makeOrgPackage
Making an organism package from annotations available from a set of named data.frames.
makeProbePackage
Make a package with probe sequence related data for microarrays
getProbeDataAffy
Read a data file describing the probe sequences on an Affymetrix genechip
populateDB
Populates an SQLite DB with and produces a schema definition
wrapBaseDBPackages
Wrap up all the Base Databases into Packages for distribution
makeDBPackage
Creates a sqlite database, and then makes an annotation package with it