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AnnotationForge (version 1.8.2)
Code for Building Annotation Database Packages
Description
Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.
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1.14.2
1.12.0
1.10.1
1.8.2
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Version
1.8.2
License
Artistic-2.0
Maintainer
Bioconductor Package Maintainer
Last Published
January 1st, 1970
Functions in AnnotationForge (1.8.2)
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makeChipPackage
Making a chip package from annotations available from data.frame of probes mapped to gene IDs and an existing org package.
getProbeDataAffy
Read a data file describing the probe sequences on an Affymetrix genechip
generateSeqnames.db
Generates the seqnames.db package and database
getProbeData_1lq
Read a 1lq file for an Affymetrix genechip
AnnDbPkg-maker
Creates an SQLite-based annotation package
makeInpDb
Builds an individual DB from online files at inparanoid that is in turn meant for generating Inparanoid 8 based objects.
available.db0pkgs
available.db0pkgs
makeOrgPackageFromNCBI
Making an organism package from annotations available from NCBI.
makeProbePackage
Make a package with probe sequence related data for microarrays
makeOrgPackage
Making an organism package from annotations available from a set of named data.frames.
wrapBaseDBPackages
Wrap up all the Base Databases into Packages for distribution
makeDBPackage
Creates a sqlite database, and then makes an annotation package with it
populateDB
Populates an SQLite DB with and produces a schema definition