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AnnotationFuncs (version 1.18.0)

Annotation translation functions

Description

Functions for handling translating between different identifieres using the Biocore Data Team data-packages (e.g. org.Bt.eg.db).

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Version

Version

1.18.0

License

GPL-2

Maintainer

Stefan McKinnon Edwards

Last Published

February 15th, 2017

Functions in AnnotationFuncs (1.18.0)

AnnotationFuncs-package

Annotation translation functions
getEvidenceCodes

Returns GO evidence codes.
getOrthologs

Performs quicker lookup for orthologs in homologe data packages...
pickRefSeq

Picks a prioritised RefSeq identifier from a list of identifiers...
removeNAs

Removes entries equal NA from list or vector...
.dbEscapeString

Private Escape string...
translate

Translate between different identifiers...
.pickRef

Secret function that does the magic for pickRefSeq.
pickGO

Cleans up result from org...
.getTableName

Gets the table name from the INPARANOID style genus names.
mapLists

Replaces contents of list A with elements of list B...