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AnnotationFuncs (version 1.20.0)

Annotation translation functions

Description

Functions for handling translating between different identifieres using the Biocore Data Team data-packages (e.g. org.Bt.eg.db).

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Version

Version

1.20.0

License

GPL-2

Maintainer

Stefan McKinnon Edwards

Last Published

February 15th, 2017

Functions in AnnotationFuncs (1.20.0)

.dbEscapeString

Private Escape string...
AnnotationFuncs-package

Annotation translation functions
pickRefSeq

Picks a prioritised RefSeq identifier from a list of identifiers...
translate

Translate between different identifiers...
removeNAs

Removes entries equal NA from list or vector...
.getTableName

Gets the table name from the INPARANOID style genus names.
mapLists

Replaces contents of list A with elements of list B...
pickGO

Cleans up result from org...
.pickRef

Secret function that does the magic for pickRefSeq.
getOrthologs

Performs quicker lookup for orthologs in homologe data packages...
getEvidenceCodes

Returns GO evidence codes.