AnnotationHubRecipes-package:
Transform public data resources into Bioconductor Data Structures
~~ package title ~~
Description
These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.
Details
|
Package: |
| AnnotationHubRecipes |
|
Type: |
| Package |
|
Version: |
| 1.0 |
|
Date: |
| 2012-11-30 |
|
License: |
| Artistic-2.0 |
This package provides a set of methods which convert bioinformatic data
resources into standard Bioconductor data types. For example, a UCSC
genome browser track, expressed as a BED file, is converted into a
GRanges object. Not every valuable data resource can be transformed
quite so easily; some require more elaborate transformation, and hence a
more specialized recipe. Every effort is made to limit the number of
recipes required. One strategy that helps with the principle of "zero
curation": unless absolutely required, the "cooked" version of the data
resource produced by a recipe is a simple and unembellished reflection
of the original data in its downloaded form.