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AnnotationHubData (version 1.2.2)

Transform public data resources into Bioconductor Data Structures

Description

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

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Version

Version

1.2.2

License

Artistic-2.0

Maintainer

Bioconductor Package Maintainer

Last Published

February 15th, 2017

Functions in AnnotationHubData (1.2.2)

AnnotationHubRecipes-package

Transform public data resources into Bioconductor Data Structures ~~ package title ~~
flog

flog
makeEnsemblFasta

Functions to convert Ensembl FASTA files to FaFile and TwoBitFile for inclusion in AnnotationHub.
ImportPreparer-class

Class ImportPreparer and generic newResources
updateResources

updateResources
AnnotationHubMetadata-class

Class "AnnotationHubMetadata" and methods
makeGencodeFasta

Recipe to add Gencode FASTA resources to AnnotationHub
upload_to_S3

Upload a file to Amazon S3