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Apoderoides (version 3.0.1)

Prioritize and Delete Erroneous Taxa in a Large Phylogenetic Tree

Description

Finds, prioritizes and deletes erroneous taxa in a phylogenetic tree. This package calculates scores for taxa in a tree. Higher score means the taxon is more erroneous. If the score is zero for a taxon, the taxon is not erroneous. This package also can remove all erroneous taxa automatically by iterating score calculation and pruning taxa with the highest score.

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Install

install.packages('Apoderoides')

Monthly Downloads

359

Version

3.0.1

License

MIT + file LICENSE

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Maintainer

Satoshi Aoki

Last Published

May 9th, 2025

Functions in Apoderoides (3.0.1)

getAllCentroids

getAllCentroids
get.upperRank

get.upperRank
calc.Score

calc.Score
getAllMRCAs

getAllMRCAs
deleteAnomaly

deleteAnomaly
autoDeletion

autoDeletion
Apoderoides-internal

Internal Apoderoides Functions
testTree

testTree
testRankList

testRankList