deleteSubFunc

getRankMRCA

getAllRankNames

findUpperNode

is.monophyleticByRank

getAllCentroids_C

calcIntScore_C

calcOutScore_C

extractOTUbyRankName_C

findSubTips_C

getTipNo_C

getRankCentroid_C

Apoderoides-internal

Finds, prioritizes and deletes erroneous taxa in a phylogenetic tree. This package calculates scores for taxa in a tree. Higher score means the taxon is more erroneous. If the score is zero for a taxon, the taxon is not erroneous. This package also can remove all erroneous taxa automatically by iterating score calculation and pruning taxa with the highest score.

Satoshi Aoki

Apoderoides

Prioritize and Delete Erroneous Taxa in a Large Phylogenetic
Tree

Keita Fukasawa

Apoderoides-internal function

Internal Apoderoides Functions — Apoderoides-internal

Internal Apoderoides Functions

Apoderoides-internal: Internal Apoderoides Functions

Description

Arguments

Value

Details