BDgraph v2.62

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Bayesian Structure Learning in Graphical Models using Birth-Death MCMC

Statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889>, Mohammadi and Wit (2019) <doi:10.18637/jss.v089.i03>.

Functions in BDgraph

Name Description
bdgraph Search algorithm in graphical models
plotcoda Convergence plot
print.sim Print function for S3 class "sim"
print.bdgraph Print function for S3 class "bdgraph"
plot.sim Plot function for S3 class "sim"
plinks Estimated posterior link probabilities
pgraph Posterior probabilities of the graphs
rwish Sampling from Wishart distribution
rmvnorm Generate data from the multivariate Normal distribution
bdgraph.mpl Search algorithm in graphical models using marginal pseudo-likehlihood
plot.bdgraph Plot function for S3 class "bdgraph"
plot.graph Plot function for S3 class "graph"
graph.sim Graph simulation
geneExpression Human gene expression dataset
gnorm Normalizing constant for G-Wishart
precision Estimated precision matrix
traceplot Trace plot of graph size
plotroc ROC plot
surveyData Labor force survey data
select Graph selection
link2adj Extract links from an adjacency matrix
reinis Risk factors of coronary heart disease
rgwish Sampling from G-Wishart distribution
transfer transfer for discrete data
summary.bdgraph Summary function for S3 class "bdgraph"
churn Churn data set
compare Graph structure comparison
bdgraph.npn Nonparametric transfer
BDgraph-package Bayesian Structure Learning in Graphical Models
covariance Estimated covariance matrix
bdgraph.sim Graph data simulation
bf Bayes factor between two graphs
adj2link Extract links from an adjacency matrix
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Vignettes of BDgraph

Name
BDgraph.pdf
vignette.Rnw
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Last month downloads

Details

Date 2019-12-05
URL https://www.uva.nl/profile/a.mohammadi
License GPL (>= 2)
Repository CRAN
NeedsCompilation yes
Packaged 2019-12-05 17:16:34 UTC; reza
Date/Publication 2019-12-05 18:40:10 UTC

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