# BDgraph v2.62

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## Bayesian Structure Learning in Graphical Models using Birth-Death MCMC

Statistical tools for Bayesian structure learning in undirected graphical models for continuous, discrete, and mixed data. The package is implemented the recent improvements in the Bayesian graphical models literature, including Mohammadi and Wit (2015) <doi:10.1214/14-BA889>, Mohammadi and Wit (2019) <doi:10.18637/jss.v089.i03>.

## Functions in BDgraph

Name | Description | |

bdgraph | Search algorithm in graphical models | |

plotcoda | Convergence plot | |

print.sim | Print function for S3 class "sim" | |

print.bdgraph | Print function for S3 class "bdgraph" | |

plot.sim | Plot function for S3 class "sim" | |

plinks | Estimated posterior link probabilities | |

pgraph | Posterior probabilities of the graphs | |

rwish | Sampling from Wishart distribution | |

rmvnorm | Generate data from the multivariate Normal distribution | |

bdgraph.mpl | Search algorithm in graphical models using marginal pseudo-likehlihood | |

plot.bdgraph | Plot function for S3 class "bdgraph" | |

plot.graph | Plot function for S3 class "graph" | |

graph.sim | Graph simulation | |

geneExpression | Human gene expression dataset | |

gnorm | Normalizing constant for G-Wishart | |

precision | Estimated precision matrix | |

traceplot | Trace plot of graph size | |

plotroc | ROC plot | |

surveyData | Labor force survey data | |

select | Graph selection | |

link2adj | Extract links from an adjacency matrix | |

reinis | Risk factors of coronary heart disease | |

rgwish | Sampling from G-Wishart distribution | |

transfer | transfer for discrete data | |

summary.bdgraph | Summary function for S3 class "bdgraph" | |

churn | Churn data set | |

compare | Graph structure comparison | |

bdgraph.npn | Nonparametric transfer | |

BDgraph-package | Bayesian Structure Learning in Graphical Models | |

covariance | Estimated covariance matrix | |

bdgraph.sim | Graph data simulation | |

bf | Bayes factor between two graphs | |

adj2link | Extract links from an adjacency matrix | |

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## Vignettes of BDgraph

Name | ||

BDgraph.pdf | ||

vignette.Rnw | ||

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## Last month downloads

## Details

Date | 2019-12-05 |

URL | https://www.uva.nl/profile/a.mohammadi |

License | GPL (>= 2) |

Repository | CRAN |

NeedsCompilation | yes |

Packaged | 2019-12-05 17:16:34 UTC; reza |

Date/Publication | 2019-12-05 18:40:10 UTC |

imports | igraph |

Contributors | Ernst Wit, Adrian Dobra, Reza Mohammadi |

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