clinf

A subset of clinical data from pediatric and young adult t-lineage acute
lymphoblastic leukmia patients in the Children's Oncology Group trial
AALL0434, published in Liu et al., 2017 Nature Genetics

datasets

A bootstrap-based approach to integrate multiple forms of
high dimensional genomic data with multiple clinical endpoints.  This method
is used to find clinically meaningful groups of genomic features, such
as genes or pathways. A manuscript describing this method is in preparation.

Anna Eames Seffernick

BEAMR

Bootstrap Evaluation of Association Matrices

Stanley Pounds

Xueyuan Cao

clinf function

<div class="section" id="clinf">
<h3><code>clinf</code></h3>
A data frame with 265 rows and 8 columns:<dl>
<dt>ID</dt>
<dd>Subject ID</dd><dt>MRD29</dt>
<dd>Minimal residual disease measured at day 29</dd><dt>RNA.clm</dt>
<dd>Key to match to RNA matrix</dd><dt>Lesion.clm</dt>
<dd>Key to match Lesion matrix</dd><dt>Lesion.id</dt>
<dd>Key to match Lesion matrix</dd><dt>RNA.id</dt>
<dd>Key to match RNA matrix</dd><dt>EFS</dt>
<dd>Event-free survival Surv object</dd><dt>OS</dt>
<dd>Overall survival Surv object</dd>
</dl></div>

Format

Pediatric T-ALL Clinical Data from COG trial AALL0434 — clinf

<div class='section' id='clinf'>
<h3><code>clinf</code></h3>


A data frame with 265 rows and 8 columns:<dl>
<dt>ID</dt>
<dd>Subject ID</dd>

<dt>MRD29</dt>
<dd>Minimal residual disease measured at day 29</dd>

<dt>RNA.clm</dt>
<dd>Key to match to RNA matrix</dd>

<dt>Lesion.clm</dt>
<dd>Key to match Lesion matrix</dd>

<dt>Lesion.id</dt>
<dd>Key to match Lesion matrix</dd>

<dt>RNA.id</dt>
<dd>Key to match RNA matrix</dd>

<dt>EFS</dt>
<dd>Event-free survival Surv object</dd>

<dt>OS</dt>
<dd>Overall survival Surv object</dd>


</dl>

</div>

clinf: Pediatric T-ALL Clinical Data from COG trial AALL0434

Description

Usage

Arguments

Format

`clinf`