BEAMR (version 1.1.0)

compute_set_pvalues: Compute BEAMR p-values for sets

Description

Compute BEAMR p-values for sets

Usage

compute_set_pvalues(
  beam.stats,
  peel = FALSE,
  z = TRUE,
  alpha = 0.1,
  mess.freq = 25
)

Value

A list with a data.frame of set p-values from BEAMR analysis, a data.frame of summary row p-values, and a data frame of set matching.

Arguments

beam.stats

A beam.stats object from compute_beam_stats function

peel

Logical indicating whether to peel in p-value calculation

z

Logical indicating whether to z-scale each vector of one coefficient estimate across bootstraps before analysis

alpha

Maximum depth to peel (reduces computing time); default 0.1.

mess.freq

Message frequency; default 25.

Examples

data(beam_stats_sm)
test.pvals <- compute_set_pvalues(beam.stats=beam_stats_sm)