omicdat

<p>A subset of genomic lesion and RNA expression data from pediatric and young
adult t-lineage acute lymphoblastic leukmia patients in the Children's
Oncology Group trial AALL0434, published in Liu et al., 2017 Nature
Genetics</p>

datasets

A bootstrap-based approach to integrate multiple forms of
high dimensional genomic data with multiple clinical endpoints.  This method
is used to find clinically meaningful groups of genomic features, such
as genes or pathways. A manuscript describing this method is in preparation.

Anna Eames Seffernick

BEAMR

Bootstrap Evaluation of Association Matrices

Stanley Pounds

Xueyuan Cao

omicdat function


<div class="section" id="omicdat">
<h3><code>omicdat</code></h3><p></p><p>
</p><p>A list with two dataframes of omic data for each subject</p><dl>
<dt>Lesion</dt>
<dd><p>A dataframe with 20 rows and 265 columns indicating presence of lesion.</p></dd><p></p><p><dt>RNA</dt>
<dd><p>A dataframe with 20 rows and 265 columns with expression data.</p></dd></p><p>
</p></dl><p></p><p></p></div>


Format

Pediatric T-ALL Omics Data from COG trial AALL0434 — omicdat


<div class='section' id='omicdat'>
<h3><code>omicdat</code></h3>


<p>A list with two dataframes of omic data for each subject</p><dl>
<dt>Lesion</dt>
<dd><p>A dataframe with 20 rows and 265 columns indicating presence of lesion.</p></dd>

<dt>RNA</dt>
<dd><p>A dataframe with 20 rows and 265 columns with expression data.</p></dd>


</dl>

</div>


omicdat: Pediatric T-ALL Omics Data from COG trial AALL0434

Description

Usage

Arguments

Format

`omicdat`