setdat

<p>Map between annotation and omic data for a subset of clinical data from
pediatric and young adult t-lineage acute lymphoblastic leukmia patients
in the Children's Oncology Group trial AALL0434, published in Liu et al.,
2017 Nature Genetics</p>

datasets

A bootstrap-based approach to integrate multiple forms of
high dimensional genomic data with multiple clinical endpoints.  This method
is used to find clinically meaningful groups of genomic features, such
as genes or pathways. A manuscript describing this method is in preparation.

Anna Eames Seffernick

BEAMR

Bootstrap Evaluation of Association Matrices

Stanley Pounds

Xueyuan Cao

setdat function


<div class="section" id="setdat">
<h3><code>setdat</code></h3><p></p><p>
</p><p>A data frame with 40 rows and 3 columns</p><dl>
<dt>set.id</dt>
<dd><p>Ensembl ID that defines gene-feature set</p></dd><p></p><p><dt>mtx.id</dt>
<dd><p>Name of omic matrix where corresponding feature data can be found</p></dd></p><p><dt>row.id</dt>
<dd><p>Feature name in corresponding omic matrix</p></dd></p><p>
</p></dl><p></p><p></p></div>


Format

Map of Pediatric Data from COG trial AALL0434 — setdat


<div class='section' id='setdat'>
<h3><code>setdat</code></h3>


<p>A data frame with 40 rows and 3 columns</p><dl>
<dt>set.id</dt>
<dd><p>Ensembl ID that defines gene-feature set</p></dd>

<dt>mtx.id</dt>
<dd><p>Name of omic matrix where corresponding feature data can be found</p></dd>

<dt>row.id</dt>
<dd><p>Feature name in corresponding omic matrix</p></dd>


</dl>

</div>


setdat: Map of Pediatric Data from COG trial AALL0434

Description

Usage

Arguments

Format

`setdat`