read_settings

name of BENMMI input file (<code>character</code>)

filename

This function reads BENMMI settings files. See the package vignette
for a description of its format. Create an example file by
calling the <code><a rd-options="BENMMI" href="/link/BENMMIdir?package=BENMMI&version=4.3-7&to=BENMMI" data-mini-rdoc="BENMMI::BENMMIdir">BENMMIdir</a></code>-function.

Analysis tool for evaluating benthic multimetric indices (BENMMIs).
It generates reproducible reports on the analysis of benthic data, e.g.,
validation and correction of species names, sample pooling, automatic
conversion of genus to species names, outlier detection, benthic
indicator calculation, optimization of single and
multimetric indicators against a pressure gradient, and spatial aggregation
of benthic indicators. One of its use cases was the development of a common
benthic indicator for <https://www.ospar.org> (publication accepted by
Ecological Indicators). See Van Loon et al. (2018) <doi:10.1016/j.ecolind.2017.09.029> for details.

Dennis Walvoort

BENMMI

Benthic Multi-Metric Index

Willem van Loon

read_settings function

This function reads BENMMI settings files. See the package vignette
for a description of its format. Create an example file by
calling the <code><a rd-options='BENMMI' href='BENMMIdir'>BENMMIdir</a></code>-function.

read_settings: Read BENMMI Settings File

Description

Usage

Arguments

Details

See Also