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BIDistances (version 0.1.3)

Bioinformatic Distances

Description

A selection of distances measures for bioinformatics data. Other important distance measures for bioinformatics data are selected from the R package 'parallelDist'. A special distance measure for the Gene Ontology is available.

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Version

Install

install.packages('BIDistances')

Monthly Downloads

135

Version

0.1.3

License

GPL-3

Maintainer

Quirin Stier

Last Published

May 10th, 2025

Functions in BIDistances (0.1.3)

msmd

msmd
TransformSimilarity2MetricDistance

TransformSimilarity2MetricDistance
VariablePrecision

VariablePrecision
WassersteinDist

Wasserstein Distance
fastPdist

fastPdist
nearest

Nearest
twed

twed
DistanceDistributions

Distance Distribution
FractionalDistance

Calculates fractional distances
Mahalanobis

Pairwise Squared Generalized Mahalanobis Distances
GiniDist

GiniDist
DistanceMatrix

Pairwise distance between pairs of objects
ToroidDist2All

Calculate toroid Euclidean Distances
SharedNeighborDistance

Shared Neighbor Distance
fastPdistC

fastPdist
Dist2All

Distances to all data points
jaccard

Computes dissimilarity indices Jaccard
CosinusDistance

Cosine Distance
Tfidf_dist

Term frequency-inverse document frequency distance
Hearingloss_N109

Hearingloss data
Hepta

Hepta introduced in [Ultsch, 2003]