getCS.Mat

Locus

genos.sub

Allele.Freq

Allele.Combn

Chi Square contingency matrix builder with rare cell binning

Data sets and functions for chi-squared Hardy-Weinberg and case-
    control association tests of highly polymorphic genetic data [e.g., human
    leukocyte antigen (HLA) data]. Performs association tests at multiple levels of
    polymorphism (haplotype, locus and HLA amino-acids). Combines rare variants to
    a common class to account for sparse cells in tables as described by Hollenbach
    JA, Mack SJ, Thomson G, Gourraud PA. 'Analytical methods for disease association
    studies with immunogenetic data.' Methods Mol Biol. 2012;882:245-66.

getCS.Mat: Chi square matrices

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