Case-Control Analysis of Multi-Allelic Loci
Description
Data sets and functions for chi-squared Hardy-Weinberg and case-
control association tests of highly polymorphic genetic data [e.g., human
leukocyte antigen (HLA) data]. Performs association tests at multiple levels of
polymorphism (haplotype, locus and HLA amino-acids). Combines rare variants to
a common class to account for sparse cells in tables as described by Hollenbach
JA, Mack SJ, Thomson G, Gourraud PA. 'Analytical methods for disease association
studies with immunogenetic data.' Methods Mol Biol. 2012;882:245-66.