Exon.Filter

Locus

Exon

<p>ExonPtnAlign object filtered by Locus</p>

EPL.Locus

RefExons

E.Ptn.Starts

<p>Filters the ExonPtnAlign object by locus and exon.</p>

Data sets and functions for chi-squared Hardy-Weinberg and case-control association tests of highly polymorphic genetic data [e.g., human leukocyte antigen (HLA) data]. Performs association tests at multiple levels of polymorphism (haplotype, locus and HLA amino-acids) as described in Pappas DJ, Marin W, Hollenbach JA, Mack SJ (2016) <doi:10.1016/j.humimm.2015.12.006>. Combines rare variants to a common class to account for sparse cells in tables as described by Hollenbach JA, Mack SJ, Thomson G, Gourraud PA (2012) <doi:10.1007/978-1-61779-842-9_14>.

Steven Mack

BIGDAWG

Case-Control Analysis of Multi-Allelic Loci

Exon.Filter function

Filter Exon Specific Alignment Sections — Exon.Filter

Filter Exon Specific Alignment Sections

Exon.Filter: Filter Exon Specific Alignment Sections

Description

Usage

Arguments