Amino Acid Contingency Table Build
Amino Acid Wrapper
Alignment Object Creator
Updated Alignment Object Creator
Amino Acid Analysis Function
Check Input Parameters for GLS conversion
Check Data Structure
DRB345 haplotype zygosity checker single locus
Tabular Data Locus Format Tool
DRB345 Expected
Contingency Table Check
Function to Check Release Versions
Contingency Table Amino Acid ChiSq Testing
GL String Allele Check
Alignment Filter
GL String Locus Check
Error Code Display and Logging
Locus Ordering for GL2Tab
Haplotype Analysis Function for Multicore
HLA P group Finder
File Fetcher
Genotype List String to Tabular Data Conversion
Data Object Merge and Output
Filter Exon Specific Alignment Sections
Locus Wrapper
Condensing Exon Specific Alignments to Single Dataframe
BIGDAWG Main Wrapper Function
Append Genetic System Locus Designation to Allele String
Build Output Matrix for GL2Tab Conversion
Table Maker
HLA Formatting Check for Amino Acid Analysis
Check Cores Parameters
HLA P group File Formatter
Creation of a 2x2 table using the indicated orientation.
Case Control Odds Ratio Calculation from Epicalc list variation
Case Control Odds Ratio Calculation from Epicalc
Create Empty Table
DRB345 Column Processing
HLA Loci Legitimacy Check for Amino Acid Analysis
Expression Variant Suffix Removal
Genotype Combination Maker
DRB345 haplotype zygosity wrapper
Replace or Fill 00:00 allele strings
Chi square matrices
Recompute number of alleles
Protein Exon Alignment Formatter
Check Input Parameters
Haplotype Wrapper for Multicore
Exon protein alignments.
Ambiguous Alleles Locus Name Formatting
Data Summary Function
Hardy-Weinbery Wrapper
Prepare imported data
Strict Chi-squared Contingency Table Test
Example HLA Dataset
Locus Analysis Function
Genotype List String Expander
Haplotype List Builder
Replace absent allele strings
Case-Control Odds ratio calculation and graphing
Genotype List String to Tabular Data Conversion
Genotype List String Conversion
HLA Allele Legitimacy Check for Amino Acid Analysis
HLA trimming function
Contextual Binning Chi-squared Contingency Table Test
Removes System and Locus from Alleles
Hardy Weinbergy Equilibrium Function
Hardy Weinbergy Equilibrium Function
Chi square test statistic
Genotype List String Condenser
Haplotype Name Builder
File Name Extraction
Locus Condenser for Tab2GL
Update function for protein aligment upon new IMGT HLA data release
Haplotype missing Allele summary function
Haplotype Table Maker
Observed Frequency