BMTME v1.0.4


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Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis

Genomic selection and prediction models with the capacity to use multiple traits and environments, through ready-to-use Bayesian models. It consists a group of functions that help to create regression models for some genomic models proposed by Montesinos-L<c3><b3>pez, et al. (2016) <doi:10.1534/g3.116.032359> also in Montesinos-L<c3><b3>pez et al. (2018) <doi:10.1534/g3.118.200728> and Montesinos-L<c3><b3>pez et al. (2018) <doi:10.2134/agronj2018.06.0362>.

Functions in BMTME

Name Description
barplot.BMORSENV barplot BMORSENV graph
WheatMadaToy Wheat Mada Data
summary.BMORSCV summary.BMORSCV
print.BMORSCV Print BMORSCV information object
print.BMORSENV Print BMORSENV information object
summary.BMECV summary.BMECV
genoMaizeToy Genomic values of Maize dataset.
genoWheatToy Genomic values of Wheat toy dataset.
WheatToy Phenotypic values and Genetic values of Wheat toy dataset.
cholesky Cholesky
boxplot.BMECV boxplot.BMECV
print.BMTME Print BMTME information object
genoJapa50 Genomic values of Japa dataset.
genoMada Genomic values of Mada dataset.
BMORS Bayesian Multi-Output Regression Stacking (BMORS)
phenoIranianToy Phenotypic values of Iranian toy dataset.
detectCores Detect number of cores
genoIranianToy Genomic values of Iranian toy dataset.
print.BMTMECV Print BMTMECV information object
plot.BME plot.BME
print.BMECV Print BMECV information object
phenoJapa30 Phenotypic values of Japa dataset.
plot.BMORSCV Plot BMORSCV Simple scatter plot comparing the observed values against the predicted values.
boxplot.BMORSCV boxplot.BMORSCV
print.BMORS Print BMORS information object
summary.BMORSENV summary.BMORSENV
boxplot.BMTMECV boxplot.BMTMECV
summary.BMTMECV summary.BMTMECV
residuals.BME residuals.BME
residuals.BMTME residuals.BMTME
genoJapa30 Genomic values of Japa dataset.
phenoJapa50 Phenotypic values of Japa dataset.
phenoMada Phenotypic values of Mada dataset.
phenoMaizeToy Phenotypic values of Maize dataset.
plot.BMTME plot.BMTME Simple scatter plot comparing the observed values against the predicted values.
phenoWheatToy Phenotypic values of Wheat toy dataset.
print.BME Print BME information object
BMORS_Env Bayesian Multi-Output regression stacking for specific environment estimations
BMTME Bayes Multi-Trait Milti-Environment Model (BMTME)
CV.KFold Cross-Validation with K Folds
CV.RandomPart Cross-Validation with Random Partitions
MaizeToy Maize Data
WheatIranianToy Wheat Iranian Toy Data
WheatJapa30 Wheat Japa 30 Data
WheatJapa50 Wheat Japa 50 Data
BME Bayesian Multi-Environment Model (BME)
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Vignettes of BMTME

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Last month downloads


Date 2018-12-25
Language en-US
License LGPL-3
Encoding UTF-8
LazyData true
Type Package
RoxygenNote 6.1.1
NeedsCompilation yes
Collate BME.R BMTME.R BMTME_Package.R BMORS.R BMORSEnv.R cholesky.R datasets.R detectCore.R RandomPartition.R RcppExports.R utils.R
LinkingTo Rcpp, RcppArmadillo
SystemRequirements C++11
VignetteBuilder knitr
Packaged 2019-01-06 17:58:50 UTC; frahik
Repository CRAN
Date/Publication 2019-01-11 17:20:10 UTC

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