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BMTME (version 1.0.4)

Bayesian Multi-Trait Multi-Environment for Genomic Selection Analysis

Description

Genomic selection and prediction models with the capacity to use multiple traits and environments, through ready-to-use Bayesian models. It consists a group of functions that help to create regression models for some genomic models proposed by Montesinos-Lpez, et al. (2016) also in Montesinos-Lpez et al. (2018) and Montesinos-Lpez et al. (2018) .

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Install

install.packages('BMTME')

Monthly Downloads

85

Version

1.0.4

License

LGPL-3

Issues

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Maintainer

Luna-V<c3><a1>zquez Francisco J.

Last Published

January 11th, 2019

Functions in BMTME (1.0.4)

barplot.BMORSENV

barplot BMORSENV graph
WheatMadaToy

Wheat Mada Data
summary.BMORSCV

summary.BMORSCV
print.BMORSCV

Print BMORSCV information object
print.BMORSENV

Print BMORSENV information object
summary.BMECV

summary.BMECV
genoMaizeToy

Genomic values of Maize dataset.
genoWheatToy

Genomic values of Wheat toy dataset.
WheatToy

Phenotypic values and Genetic values of Wheat toy dataset.
cholesky

Cholesky
boxplot.BMECV

boxplot.BMECV
print.BMTME

Print BMTME information object
genoJapa50

Genomic values of Japa dataset.
genoMada

Genomic values of Mada dataset.
BMORS

Bayesian Multi-Output Regression Stacking (BMORS)
phenoIranianToy

Phenotypic values of Iranian toy dataset.
detectCores

Detect number of cores
genoIranianToy

Genomic values of Iranian toy dataset.
print.BMTMECV

Print BMTMECV information object
plot.BME

plot.BME
print.BMECV

Print BMECV information object
phenoJapa30

Phenotypic values of Japa dataset.
plot.BMORSCV

Plot BMORSCV Simple scatter plot comparing the observed values against the predicted values.
boxplot.BMORSCV

boxplot.BMORSCV
print.BMORS

Print BMORS information object
summary.BMORSENV

summary.BMORSENV
boxplot.BMTMECV

boxplot.BMTMECV
summary.BMTMECV

summary.BMTMECV
residuals.BME

residuals.BME
residuals.BMTME

residuals.BMTME
genoJapa30

Genomic values of Japa dataset.
phenoJapa50

Phenotypic values of Japa dataset.
phenoMada

Phenotypic values of Mada dataset.
phenoMaizeToy

Phenotypic values of Maize dataset.
plot.BMTME

plot.BMTME Simple scatter plot comparing the observed values against the predicted values.
phenoWheatToy

Phenotypic values of Wheat toy dataset.
print.BME

Print BME information object
BMORS_Env

Bayesian Multi-Output regression stacking for specific environment estimations
BMTME

Bayes Multi-Trait Milti-Environment Model (BMTME)
CV.KFold

Cross-Validation with K Folds
CV.RandomPart

Cross-Validation with Random Partitions
MaizeToy

Maize Data
WheatIranianToy

Wheat Iranian Toy Data
WheatJapa30

Wheat Japa 30 Data
WheatJapa50

Wheat Japa 50 Data
BME

Bayesian Multi-Environment Model (BME)