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BOG (version 2.0)

Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions

Description

An implementation of three statistical tests for identification of COG (Cluster of Orthologous Groups) that are over represented among genes that show differential expression under conditions. It also provides tabular and graphical summaries of the results for easy visualisation and presentation.

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Version

Install

install.packages('BOG')

Monthly Downloads

22

Version

2.0

License

GPL-3

Maintainer

Jincheol Park

Last Published

March 3rd, 2015

Functions in BOG (2.0)

BOG

BOG
printRANK

printRANK
anthracis

Bacillus anthracis str. 'Ames Ancestor'
hgplot

hgplot
printGSEA

printGSEA
coxiella

Coxiella burnetii RSA 493
francisella

Francisella tularensis subsp. holarctica LVS
internalhgplot

internalhgplot
printHG

printHG
gseaplot

gseaplot
ecoli

Escherichia coli O157:H7 str. Sakai
BOG-package

BOG is a package for identifying differentially regulated genes in the light of gene functions.
DIMEplot

DIMEplot
BOGest

BOGest
BOGstat

BOGstat
brucella

Brucella suis 1330
anthracis_iron

anthracis_iron
difficile

Clostridium difficile 630