BOG (version 2.0)

gseaplot: gseaplot

Description

This is the command to visualize the path of GSEA scores. The GSEA takes all genes into account by constructing a test statistic based on their local-fdr without pre-selection of threshold.

Usage

gseaplot(x, cat = NULL)

Arguments

x

This is a bog object.

cat

To plot an enrichment score behavior, a user needs to specify a cat argument from one of COG groups. The default of cat is set NULL to raise BOG specific warning instead of R-system warning when a user fogets to specify COG, which should match one of the COGs specified in the input file or in the built-in files. The warning message is ""BOG : Category needs to be specified.""

References

Subramian, A. et al.(2005) Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. PNAS vol.102 no.43, 15545-15550.