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BPM (version 1.0.0)

Bayesian Purity Model to Estimate Tumor Purity

Description

Bayesian purity model to estimate tumor purity using methylation array data (DNA methylation Infinium 450K array data) without reference samples.

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Version

Install

install.packages('BPM')

Monthly Downloads

195

Version

1.0.0

License

GPL (>= 2)

Maintainer

Jianzhao Gao

Last Published

November 3rd, 2018

Functions in BPM (1.0.0)

BayPM

Bayesian Purity Model (BPM) Main functions.
annotGeneNames

gene names of probes in 450K array dat
goodProbes

good probes in packages
simUCEC

Simulated data to illustrate datasets in packages
estimateNu

Estimate noise intensity (nv) for non-DMCs, using maximum likelihood estmiation.
fullSampler

Sampling xi and alpha (tumor purity)
ApiGetDMCs

Get TOPK=500 DMCs and non-DMCs using moderated-t test
BPM

BPM software package