BPM (version 1.0.0)

fullSampler: Sampling xi and alpha (tumor purity)

Description

Sampling xi and alpha (tumor purity)

Usage

fullSampler(y, z, mstates, xprior = NULL, maxit = 1000,
  burnin = maxit, xpar = FALSE, n_ab0 = NULL, alp0 = NULL,
  xbar0 = NULL, trace = FALSE, verbose = FALSE)

Arguments

y

A matrix, observed pure normal samples

z

A matrix, observed mixed tumor samples

mstates

A matrix, hyper/hypo of dataset

xprior

A matrix, prior knowledge about purity

maxit

A number, maximum iteraction

burnin

A number, "burn-in" sample

xpar

Logistic, default is FALSE

n_ab0

initial value of n_ab

alp0

initial value of alpha

xbar0

initial value of xbar

trace

Logisitc, check the values in code, default is FALSE

verbose

Logistic, output the message,default is FALSE

Value

x_bar x_mode, x_last x2 x_sample x_sample xpar xprior2, nab n_ab2, alp alp2