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BSgenome (version 1.36.3)

Infrastructure for Biostrings-based genome data packages

Description

Infrastructure shared by all the Biostrings-based genome data packages

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Version

Version

1.36.3

License

Artistic-2.0

Maintainer

H Pages

Last Published

February 15th, 2017

Functions in BSgenome (1.36.3)

SNPlocs-class

SNPlocs objects
XtraSNPlocs-class

XtraSNPlocs objects
gdapply

Applies a function to elements of a GenomeData
gdReduce

Reduces arguments to a single GenomeData instance
BSgenomeViews-class

BSgenomeViews objects
BSgenomeForge

The BSgenomeForge functions
getSeq-methods

getSeq method for BSgenome objects
injectSNPs

SNP injection
BSgenome-class

BSgenome objects
BSgenome-utils

BSgenome utilities
BSParams-class

Class "BSParams"
export-methods

Export a BSgenome object as a FASTA or twoBit file
available.genomes

Find available/installed genomes
bsapply

bsapply
GenomeData-class

Data on the genome
GenomeDataList-class

List of GenomeData objects