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BUS (version 1.28.0)

Gene network reconstruction

Description

This package can be used to compute associations among genes (gene-networks) or between genes and some external traits (i.e. clinical).

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Version

Version

1.28.0

License

GPL-3

Maintainer

Yuanhua Liu

Last Published

February 15th, 2017

Functions in BUS (1.28.0)

gene.pvalue

Calculates p-value for gene-gene interaction
copasi

copasi data
gene.trait.similarity

Calculate similarity for gene-trait interaction
gene.trait.pvalue

Calculate p-value for gene-trait interaction
BUS

A wrapper function for matrices of p-value and predicted network
tumors.mRNA

Gene expression data from Human brain tumors
gene.similarity

Calculate adjacency matrix for gene-gene interaction
BUS-package

For network reconstruction.
pred.network

Predict the network
tumors.miRNA

miRNA data from Human brain tumors