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BaseSpaceR (version 1.16.0)

R SDK for BaseSpace RESTful API

Description

A rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

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Version

Version

1.16.0

License

Apache License 2.0

Maintainer

Jared OConnell

Last Published

February 15th, 2017

Functions in BaseSpaceR (1.16.0)

AppSessions-class

AppSessions object
FilesMethods

High-level methods for Files objects and related
Response-class

Item, Collection and Response objects
Variants

Methods for accessing varinant data
aAuth

Sample AppAuth instance with 'browse global' scope
AppResults-class

AppResults and "AppResultsSummary" objects
Files-class

Files and FilesSummary objects
Projects-class

Projects and ProjectsSummary objects
AppAuth-class

AppAuth class
ServiceURI-class

Class "ServiceURI"
ResponseStatus-class

Class "ResponseStatus"
Runs-class

Runs and RunsSummary objects
Private methods

Internal methods
AppSessionAuth-class

AppSessionAuth class
BaseSpaceR-package

R SDK for BaseSpace RESTful API
Genomes-class

Genomes and GenomesSummary objects
Coverage

Methods for accessing coverage data from BAM files
Samples-class

Samples and SamplesSummary objects
Users-class

Users objects and resources