BaseSpaceR (version 1.16.0)

BaseSpaceR-package: R SDK for BaseSpace RESTful API

Description

The BaseSpaceR package provides a rich R interface to Illumina's BaseSpace cloud computing environment, enabling the fast development of data analysis and visualisation tools.

Details

BaseSpace is Illumina's next-generation sequencing cloud computing environment designed with biologists in mind. Researcher can easily store, analyze, collaborate, and share genetic data (https://basespace.illumina.com). BaseSpaceR is a SDK ofering methods and data structures for working with the data resources BaseSpace REST API exposes. Features include:

• Persistent connection with the REST server.
• Support for the REST API query parameters.
• Vectorized operations in line with the R semantic. Allows for queries across multiple Projects, Samples, AppResults, Files, etc.
• S4 class system used to represent the BaseSpace data model.
• Portability on most platforms: Linux, Windows and Mac OS X.

References

BaseSpace

https://basespace.illumina.com

BaseSpace API

https://developer.basespace.illumina.com

See Also

AppAuth-class

for details on how to establish a connection with the BaseSpace server.

Response-class

for details on the structure of the objects and the interface used by the API.

Users-class, Genomes-class, Runs-class, Projects-class, Samples-class, Files-class and AppResults-class

for details on various resources supported by the API.