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BayesPeak (version 1.24.0)

Bayesian Analysis of ChIP-seq Data

Description

This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data.

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Version

Version

1.24.0

License

GPL (>= 2)

Maintainer

Jonathan Cairns

Last Published

February 15th, 2017

Functions in BayesPeak (1.24.0)

raw.output

Example raw.output object
summarize.peaks

Summarize Peaks
plot.bed

Plot bed file.
plot.PP

Job PP plot.
read.bed

BayesPeak - Bayesian analysis of ChIP-seq data
overfittingDiagnostics

Overfitting diagnostic functions
raw.output.H3K4me3

Example raw.output object from H3K4me3 data
plot.job

Plot the called peaks in a job.
bayespeak

BayesPeak - Bayesian analysis of ChIP-seq data