MMfunc

A function is used to group microbes and metabolites in shared functional pathways based on different threshold setting according to functional pathway IIS,
microbes IIS and metabolites IIS.

A strategy that provides the identification of metabolome and microbiome (Bi-omics) feature.
It is able to screen out key/driving features (metabolites, microbes, and pathway functions) by an integrated
importance score (IIS),combining sub-scores derived from difference, correlation, abundance, and network analysis.
It is able to identify microbe-function-metabolite chains and to rank association pairs within specific functions.

Tianlu Chen

BiOFI

Feature Identification Between Metabolome and Microbiome in
Disease and Health

MMfunc function

<dl><dt>IIS</dt>
<dd>The result returned by IIS() function.</dd>
<dt>path_IISthre</dt>
<dd>A IIS threshold value to identify the shared pathways.</dd>
<dt>mm_IISthre</dt>
<dd>A IIS threshold value to identify the microbes/metabolites affiliation with the shared pathways.</dd></dl>

Arguments

MMfunc — MMfunc

<dl>

<dt>IIS</dt>
<dd>The result returned by IIS() function.</dd>


<dt>path_IISthre</dt>
<dd>A IIS threshold value to identify the shared pathways.</dd>


<dt>mm_IISthre</dt>
<dd>A IIS threshold value to identify the microbes/metabolites affiliation with the shared pathways.</dd>

</dl>

MMfunc: MMfunc

Description

Usage

Value

Arguments

Examples