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BiOFI (version 0.1.0)

Feature Identification Between Metabolome and Microbiome in Disease and Health

Description

A strategy that provides the identification of metabolome and microbiome (Bi-omics) feature. It is able to screen out key/driving features (metabolites, microbes, and pathway functions) by an integrated importance score (IIS),combining sub-scores derived from difference, correlation, abundance, and network analysis. It is able to identify microbe-function-metabolite chains and to rank association pairs within specific functions.

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Version

Install

install.packages('BiOFI')

Monthly Downloads

5

Version

0.1.0

License

MIT + file LICENSE

Maintainer

Tianlu Chen

Last Published

September 22nd, 2022

Functions in BiOFI (0.1.0)

Meta2pathway.eg

Meta2pathway.eg
MMfunc

MMfunc
IIS

IIS
MicPathmatch

MicPathmatch
metabo.eg

metabo.eg
micro.eg

micro.eg
IPS

IPS
Meta2pathway

Meta2pathway
confounder.eg

confounder.eg
TarNet

TarNet
MicPathmatch.eg

MicPathmatch.eg
groupInfo.eg

groupInfo.eg