Meta2pathway

A function is used to predict the metabolic functional pathways according to the abundance of metabolites based on the algorithm Pathway Activity Profiling (PAPi).
Note: Please use compound IDs in KEGG database to replace the names of metabolites. For example, C00002 means ATP or Adenosine 5'-triphosphate in KEGG.
Users also can use Metaboanalyst (https://www.metaboanalyst.ca/MetaboAnalyst/upload/ConvertView.xhtml)(Pang, et al., 2022) to convert the metabolites names to compound IDs.
If metabolites do not have compound IDs, keep the original names.
See data example "Meta2pathway.eg" for details.

A strategy that provides the identification of metabolome and microbiome (Bi-omics) feature.
It is able to screen out key/driving features (metabolites, microbes, and pathway functions) by an integrated
importance score (IIS),combining sub-scores derived from difference, correlation, abundance, and network analysis.
It is able to identify microbe-function-metabolite chains and to rank association pairs within specific functions.

Tianlu Chen

BiOFI

Feature Identification Between Metabolome and Microbiome in
Disease and Health

Meta2pathway function

<dl><dt>metadf</dt>
<dd>A data frame including metabolites with compound ID and abundance.</dd></dl>

Arguments

Meta2pathway — Meta2pathway

<dl>

<dt>metadf</dt>
<dd>A data frame including metabolites with compound ID and abundance.</dd>

</dl>

Meta2pathway: Meta2pathway

Description

Usage

Value

Arguments

Examples