TarNet

A function is used to plot a network that consists of microbes and metabolites in the shared pathway from the result of MMfunc() function.

A strategy that provides the identification of metabolome and microbiome (Bi-omics) feature.
It is able to screen out key/driving features (metabolites, microbes, and pathway functions) by an integrated
importance score (IIS),combining sub-scores derived from difference, correlation, abundance, and network analysis.
It is able to identify microbe-function-metabolite chains and to rank association pairs within specific functions.

Tianlu Chen

BiOFI

Feature Identification Between Metabolome and Microbiome in
Disease and Health

TarNet function

<dl><dt>IIS</dt>
<dd>The result returned by IIS() function.</dd>
<dt>mm2path</dt>
<dd>The results returned by MMfunc() function.</dd>
<dt>r</dt>
<dd>A threshold value of correlation coefficient to construct the network. Default value is 0.1.</dd>
<dt>p_adjust</dt>
<dd>A threshold value of correlation adjust p value to construct the network. Default value is 0.05.</dd></dl>

Arguments

TarNet — TarNet

<dl>

<dt>IIS</dt>
<dd>The result returned by IIS() function.</dd>


<dt>mm2path</dt>
<dd>The results returned by MMfunc() function.</dd>


<dt>r</dt>
<dd>A threshold value of correlation coefficient to construct the network. Default value is 0.1.</dd>


<dt>p_adjust</dt>
<dd>A threshold value of correlation adjust p value to construct the network. Default value is 0.05.</dd>

</dl>

TarNet: TarNet

Description

Usage

Value

Arguments

Examples