Extract a single Boolean network from a probabilistic Boolean network
Generate a state vector from single gene values
Generate time series from a network
An artificial probabilistic Boolean network
Generate a random N-K Boolean network
Simulate knocked-out or over-expressed genes
Identify attractors in a Boolean network
Get states in basin of attraction
Get state transitions between a state and its attractor
Perturb the state trajectories and calculate robustness measures
getTransitionProbabilities
Get a matrix of transitions and their probabilities in probabilistic Boolean networks
Boolean model of the IGF pathway
Import a network from BioTapestry
Retrieve the transition table of a network
Binarize a set of real-valued time series
Mammalian cell cycle network
Identify important states in probabilistic Boolean networks
Perturb a Boolean network randomly
Retrieve summary information on a state
Plot the wiring of a Boolean network
Plot a sequence of states
Generation functions for biologically relevant function classes
Visualize state transitions and attractor basins
Decode the state sequence of a synchronous attractor
Print simulation results
Plot state tables or transition graphs of attractors
Visualize the transitions in a probabilistic Boolean network
Print attractor cycles
Print the results of a Markov chain simulation
Reconstruct a Boolean network from time series of measurements
Convert a symbolic network into a truth table representation
Test properties of networks by comparing them to random networks
print.ProbabilisticBooleanNetwork
Print a probabilistic Boolean network
Print a Boolean network
Construction, Simulation and Analysis of Boolean Networks
Create LaTeX state table of attractors
Save a network
Simulate a symbolic Boolean network
Print a transition table
Convert a network in truth table representation into a symbolic representation
Yeast cell cycle time series data
Perform a transition to the next state
Export a network to the Pajek file format
Create LaTeX table of state sequences
Simplify the functions of a synchronous, asynchronous, or probabilistic Boolean network
Load an SBML document
Load a Boolean network from a file
Export a network to SBML