Create LaTeX state table of attractors
Generation functions for biologically relevant function classes
Generate time series from a network
Binarize a set of real-valued time series
Generate a state vector from single gene values
Generate a random N-K Boolean network
Identify attractors in a Boolean network
Decode the state sequence of a synchronous attractor
Boolean model of the IGF pathway
Retrieve the transition table of a network
Retrieve summary information on a state
Import a network from BioTapestry
getTransitionProbabilities
Get a matrix of transitions and their probabilities in probabilistic Boolean networks
Load a Boolean network from a file
Get states in basin of attraction
Visualize state transitions and attractor basins
Load an SBML document
Visualize the transitions in a probabilistic Boolean network
Get state transitions between a state and its attractor
Identify important states in probabilistic Boolean networks
Print attractor cycles
Perturb a Boolean network randomly
Perturb the state trajectories and calculate robustness measures
print.ProbabilisticBooleanNetwork
Print a probabilistic Boolean network
Print simulation results
Print a transition table
Simplify the functions of a synchronous, asynchronous, or probabilistic Boolean network
Plot state tables or transition graphs of attractors
Save a network
Create LaTeX table of state sequences
Plot the wiring of a Boolean network
Yeast cell cycle time series data
Perform a transition to the next state
Simulate a symbolic Boolean network
Convert a symbolic network into a truth table representation
Export a network to SBML
Test properties of networks by comparing them to random networks
Reconstruct a Boolean network from time series of measurements
Plot a sequence of states
Export a network to the Pajek file format
Convert a network in truth table representation into a symbolic representation
Print a Boolean network
Print the results of a Markov chain simulation
Simulate knocked-out or over-expressed genes
Extract a single Boolean network from a probabilistic Boolean network
An artificial probabilistic Boolean network
Mammalian cell cycle network