BubbleTree (version 2.2.2)

RscoreTrack: RscoreTrack

Description

get the RScore track

Usage

RscoreTrack(.Object, result.dat, gr2, cnv.gr = NULL, min.prev = 0.15, ymax = 3, cex = 1.5)
"RscoreTrack"(.Object, result.dat, gr2, cnv.gr = NULL, min.prev = 0.15, ymax = 3, cex = 1.5)

Arguments

.Object

the object

result.dat

the results

gr2

the gr2 object

cnv.gr

cnv annotation

min.prev

previous min

ymax

max y

cex

the cex

Value

the highlighted RScore track

Examples

load(system.file("data", "allCall.lst.RData", package="BubbleTree"))
load(system.file("data", "centromere.dat.rda", package="BubbleTree"))
load(system.file("data", "allCNV.lst.RData", package="BubbleTree"))
load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree"))

gr2 = centromere.dat
trackplotter <- new("TrackPlotter")
nn <- "sam2"
z <- RscoreTrack(trackplotter, allCall.lst[[nn]]@result, gr2, allCNV.lst[[nn]])