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BubbleTree (version 2.2.2)

BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data

Description

CNV analysis in groups of tumor samples (Publication Pending).

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Version

Version

2.2.2

License

LGPL (>= 3)

Maintainer

Todd Creasy

Last Published

February 15th, 2017

Functions in BubbleTree (2.2.2)

getTracks

getTracks
BTreePlotter

BTreePlotter
RBD

RBD
BTreePredictor

BTreePredictor
makeRBD

makeRBD
Annotate

Annotate
allCall.lst

allCall.lst
drawFeatures

drawFeatures
info

info
mergeSnpCnv

mergeSnpCnv
heteroLociTrack

heteroLociTrack
vol.genes

vol.genes
btpredict

btpredict
hg19.seqinfo

hg19.seqinfo.Rd
annoByGenesAndCyto

annoByGenesAndCyto
cancer.genes.minus2

cancer.genes.minus2.rda
allHetero.lst

allHetero.lst
loadRBD

loadRBD
TrackPlotter

TrackPlotter
xyTrack

xyTrack
snp.gr

snp.gr
drawBubbles

drawBubbles
bafTrack

bafTrack
cyto.gr

cyto.gr
gene.uni.clean.gr

gene.uni.clean.gr
saveXLS

saveXLS
drawBTree

drawBTree
all.somatic.lst

all.somatic.lst
allCNV.lst

allCNV.lst
allRBD.lst

allRBD.lst
centromere.dat

centromere.dat
RscoreTrack

RscoreTrack
btcompare

btcompare
cnv.gr

cnv.gr
trackBTree

trackBTree