BubbleTree (version 2.2.2)

heteroLociTrack: heteroLociTrack

Description

get the heteroLoci track

Usage

heteroLociTrack(.Object, result.dat, gr2, hetero.gr = NULL, min.prev = 0.15, ymax = 4.3, cex = 0.5)
"heteroLociTrack"(.Object, result.dat, gr2, hetero.gr = NULL, min.prev = 0.15, ymax = 4.3, cex = 0.5)

Arguments

.Object

the object

result.dat

the results

gr2

the gr2 object

hetero.gr

hetero annotation

min.prev

previous min

ymax

max y

cex

the cex

Value

the highlightted heterozygosity track

Examples

load(system.file("data", "allCall.lst.RData", package="BubbleTree"))
load(system.file("data", "centromere.dat.rda", package="BubbleTree"))
load(system.file("data", "allHetero.lst.RData", package="BubbleTree"))
load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree"))


trackplotter <- new("TrackPlotter")
gr2 = centromere.dat
nn <- "sam2"
z1 <- heteroLociTrack(trackplotter, allCall.lst[[nn]]@result, 
                      gr2, allHetero.lst[[nn]])