BubbleTree (version 2.2.2)

trackBTree: trackBTree

Description

get the geom_segment location of the BTree track

Usage

trackBTree(.Object, rbd1, rbd2, is.matched = FALSE, min.srcSize = 0.5, min.trtSize = 0.1, min.overlap = 1e+05)
"trackBTree"(.Object, rbd1, rbd2, is.matched = FALSE, min.srcSize = 0.5, min.trtSize = 0.1, min.overlap = 1e+05)

Arguments

.Object

the object

rbd1

rbd one

rbd2

rbd two

is.matched

is it matched

min.srcSize

min src size

min.trtSize

min trt size

min.overlap

min overlap

Value

geom_segment location of BTree track

Examples

load(system.file("data", "allCall.lst.RData", package="BubbleTree"))

btreeplotter <- new("BTreePlotter", max.ploidy=5, max.size=10)
nn <- "sam2"
rbd1 <- allCall.lst[[nn]]@rbd
rbd2 <- allCall.lst[[nn]]@rbd.adj
arrows <- trackBTree(btreeplotter, rbd1, rbd2, min.srcSize=0.01, 
                     min.trtSize=0.01)
btree <- drawBTree(btreeplotter, rbd1) + 
    drawBubbles(btreeplotter, rbd2, "gray80") + arrows