BubbleTree (version 2.2.2)

xyTrack: xyTrack

Description

get the xy track

Usage

xyTrack(.Object, result.dat, gr2, min.prev = 0.15, ymax = 4.3)
"xyTrack"(.Object, result.dat, gr2, min.prev = 0.15, ymax = 4.3)

Arguments

.Object

the object

result.dat

result dataframe

gr2

gr2 object

min.prev

previous min

ymax

the max y

Value

the highlighted xy track

Examples

load(system.file("data", "allCall.lst.RData", package="BubbleTree"))
load(system.file("data", "centromere.dat.rda", package="BubbleTree"))
load(system.file("data", "hg19.seqinfo.rda", package="BubbleTree"))

trackplotter <- new("TrackPlotter")
gr2 = centromere.dat
nn <- "sam2"
ymax <- ifelse(nn %in% c("lung.wgs", "lung.wes"), 9, 4.3)
p1 <- xyTrack(trackplotter,
              result.dat=allCall.lst[[nn]]@result,
              gr2=gr2,
              ymax=ymax) + ggplot2::labs(title=nn)