Rdocumentation
powered by
Learn R Programming
CAFE (version 1.8.0)
Chromosmal Aberrations Finder in Expression data
Description
Detection and visualizations of gross chromosomal aberrations using Affymetrix expression microarrays as input
Copy Link
Link to current version
Version
Version
1.8.0
1.6.0
1.4.0
1.2.0
Version
1.8.0
License
GPL-3
Maintainer
Sander Bollen
Last Published
February 15th, 2017
Functions in CAFE (1.8.0)
Search all functions
cliSubset
Subset data with a CLI
discontPlot
Plot with discontinuous smoother
guiSubset
Subset data with a GUI
CAFE-package
Chromosomal Aberrations Finder in Expression data
ProcessCels
Processing CEL files
discontSmooth
A discontinuous smoother
facetPlot
Plot all chromosomes horizontally next to each other
slidPlot
Plot with sliding average smoother
CAFE_data
CAFE data set
rawPlot
Plot without any smoother
slidSmooth
A moving average smoother
bandStats
Find aberrations with cytoband resolution
fisher.method
Combines pvalues by using Fisher's method
armStats
Find aberrations with chromosome arm resolution
chromosomeStats
Find aberrations with whole-chromosome resolution