CAFE_data


Contains the dataset of GSE6561 and GSE10809 processed by 
<code><a rd-options="" href="/link/ProcessCels?package=CAFE&version=1.8.0" data-mini-rdoc="CAFE::ProcessCels">ProcessCels</a></code> 


datasets

Detection and visualizations of gross chromosomal
aberrations using Affymetrix expression microarrays as input

Sander Bollen

CAFE

Chromosmal Aberrations Finder in Expression data

CAFE_data function

A list containing two lists
<dl>
<dt><code>whole</code></dt><dd>A list containing a dataframe for each sample</dd> <dt><code>over</code></dt><dd>A list containing a dataframe for each sample,
but with only those probes that are deemed overexpressed</dd> </dl> The dataframes inside the lists contain the following columns: <dl>
<dt><code>ID</code></dt><dd>Affymetrix probe IDs</dd> <dt><code>Sym</code></dt><dd>Gene symbols</dd> <dt><code>Value</code></dt><dd>Log2 transformed expression values</dd> <dt><code>LogRel</code></dt><dd>Log2 transformed relative expression values
(to the median)</dd> <dt><code>Loc</code></dt><dd>Chromosomal locations</dd> <dt><code>Chr</code></dt><dd>Chromosome identifiers</dd> </dl> 

Format

GSE6561: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6561 GSE10809: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE10809

Source

Contains the dataset of GSE6561 and GSE10809 processed by 
<code><a href="ProcessCels" rd-options="">ProcessCels</a></code>

CAFE_data: CAFE data set

Description

Usage

Arguments

Format

Source

Examples