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CFO (version 2.1.0)

CFO-Type Designs in Phase I/II Clinical Trials

Description

In phase I clinical trials, the primary objective is to ascertain the maximum tolerated dose (MTD) corresponding to a specified target toxicity rate. The subsequent phase II trials are designed to examine the potential efficacy of the drug based on the MTD obtained from the phase I trials, with the aim of identifying the optimal biological dose (OBD). The 'CFO' package facilitates the implementation of dose-finding trials by utilizing calibration-free odds type (CFO-type) designs. Specifically, it encompasses the calibration-free odds (CFO) (Jin and Yin (2022) ), randomized CFO (rCFO), two-dimensional CFO (2dCFO) (Wang et al. (2023) ), time-to-event CFO (TITE-CFO) (Jin and Yin (2023) ), fractional CFO (fCFO), accumulative CFO (aCFO), TITE-aCFO, and f-aCFO designs (Fang and Yin (2024) ). It supports phase I/II trials for the CFO design and only phase I trials for the other CFO-type designs. The ‘CFO' package accommodates diverse CFO-type designs, allowing users to tailor the approach based on factors such as dose information inclusion, handling of late-onset toxicity, and the nature of the target drug (single-drug or drug-combination). The functionalities embedded in 'CFO' package include the determination of the dose level for the next cohort, the selection of the MTD for a real trial, and the execution of single or multiple simulations to obtain operating characteristics. Moreover, these functions are equipped with early stopping and dose elimination rules to address safety considerations. Users have the flexibility to choose different distributions, thresholds, and cohort sizes among others for their specific needs. The output of the 'CFO' package can be summary statistics as well as various plots for better visualization. An interactive web application for CFO is available at the provided URL.

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Version

Install

install.packages('CFO')

Monthly Downloads

573

Version

2.1.0

License

GPL-2

Maintainer

Jialu Fang

Last Published

October 15th, 2024

Functions in CFO (2.1.0)

CFOeff.simu

Conduct one simulation using the calibration-free odds (CFO) design for phase I/II trials
summary.cfo

Generate descriptive summary for objects returned by other functions
rCFO.next

Determination of the dose level for next cohort in the randomized calibration-free odds (rCFO) design for phase I trials
print.cfo

Generate descriptive summary for objects returned by other functions
lateonset.next

Determination of the dose level for next cohort in the calibration-free odds type (CFO-type) design with late-onset toxicity for phase I trials
aCFO.next

Determination of the dose level for next cohort in the accumulative calibration-free odds (aCFO) design for phase I trials
CFOeff.selectobd

Select the optimal biological dose (OBD) for the real single-drug trials
gammatable

Generating table of threshold \(\gamma_L\) and \(\gamma_R\) in the calibration-free odds (CFO) design
plot.cfo

Plot the results by other functions
lateonset.simu

Conduct one simulation using the calibration-free odds type (CFO-type) design with late-onset toxicity for phase I trials.
CFO.next

Determination of the dose level for next cohort in the calibration-free odds (CFO) design for phase I trials
CFO.oc

Generate operating characteristics of phase I trials single-drug trials in multiple simulations
CFO.selectmtd

Select the maximum tolerated dose (MTD) for the real single-drug trials
CFOeff.next

Determination of the dose level for next cohort in the calibration-free odds (CFO) design for phase I/II trials
CFOeff.oc

Generate operating characteristics of phase I/II trials single-drug trials in multiple simulations.
CFO2d.oc

Generate operating characteristics of phase I drug-combination trials in multiple simulations
CFO2d.next

Determinate the dose level for the next cohort in the two-dimensional calibration-free odds (2dCFO) design for phase I trials.
CFO.simu

Conduct one simulation using the calibration-free odds (CFO), accumulative CFO (aCFO) design, or randomized CFO (rCFO) design for phase I trials.
CFO2d.selectmtd

Select the maximum tolerated dose (MTD) for the real drug combination trials
CFO2d.simu

Conduct one simulation using the two-dimensional calibration-free odds (2dCFO) design for phase I trials.