CHRONOS (version 1.0.3)

visualizeResults: Visualize results in tabular form (txt, xlsx)

Description

Visualize results in tabular form (txt, xlsx)

Usage

visualizeResults(summary, export, expand, colors, from, to)

Arguments

summary

Evaluation results as returned from scoreSubpathways

export

'.xlsx' exports a xlsx file and '.txt' a .txt file.

expand

TRUE if each subpathway member and miRNA belongs to a single cell, FALSE if all subpathway members belong to one cell and miRNAs to another cell.

colors

The color scheme used in subScores heatmap.

from

Primary annotation convertNomenclature. Defaults to EntrezGene ID.

to

Secondary annotation convertNomenclature

Value

• A txt or a xlsx file in CHRONOS/extdata/Output/Scores/Linear/ or CHRONOS/extdata/Output/Scores/Non-Linear/

Examples

# Load scored subpathways from toy data
load(system.file('extdata', 'Examples//data.RData', package='CHRONOS'))

visualizeResults(linSubsScored, export='txt')