CINNA v1.0.0
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Deciphering Central Informative Nodes in Network Analysis
Functions for computing, comparing and demonstrating top informative centrality measures within a network.
Functions in CINNA
| Name | Description | |
| calculate.centralities | Centrality measure calculation | |
| cortex | Macaque Visual Cortex Network | |
| drugtarget | Drug Target Network | |
| giant.component.extract | Giant component extraction of a graph | |
| graph.extract.components | Component extraction of a graph | |
| kangaroo | Kangaroo Network | |
| misc.extract.components | Component extraction of miscellaneous graph formats | |
| pca.centralities | Ranking centrality measure based on contributions | |
| print.visualize.association | Print pairwise association between centrality measure's plot into a file | |
| print.visualize.correlations | Print centrality correlation plot | |
| print.visualize.dendogram | Print dendrogram plot of a graph | |
| print.visualize.graph | Print visualized based on centrality values graph | |
| tsne.centralities | t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measures | |
| proper.centralities | Proper centrality measure representation | |
| rhesus | Moreno Rhesus Network | |
| visualize.correlations | Correlation plot between centrality values | |
| visualize.dendogram | Dendrogram visualization based on a specific centrality measure | |
| visualize.association | Pairwise association between centrality values | |
| summary.pca.centralities | Summarize PCA result related to centrality measures | |
| summary.tsne.centralities | Summarize t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measures | |
| visualize.graph | Graph visualization based on a specific centrality measure | |
| visualize.heatmap | Heatmap between centrality values | |
| print.visualize.heatmap | Print centralities' heatmap | |
| print.visualize.pair.correlation | Print pairwise correlation of centrality measure and histogram plot | |
| summary.calculate.centralities | Summarize centrality measure calculation results | |
| summary.graph.extract.components | Summarize component extraction of a graph | |
| visualize.pair.correlation | Pairwise correlation between two centrality values | |
| zachary | Zachary Karate Club Network | |
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Details
| Type | Package |
| Date | 2017-07-04 |
| License | GPL-3 |
| Encoding | UTF-8 |
| LazyData | true |
| RoxygenNote | 6.0.1 |
| VignetteBuilder | knitr |
| NeedsCompilation | no |
| Packaged | 2017-07-15 14:49:16 UTC; MINoOo |
| Repository | CRAN |
| Date/Publication | 2017-07-15 21:00:03 UTC |
| imports | centiserve , circlize , corrplot , dendextend , factoextra , FactoMineR , GGally , ggplot2 , igraph , network , pheatmap , plyr , qdapTools , Rtsne , sna , viridis |
| suggests | knitr , rmarkdown |
| Contributors | Minoo Ashtiani, Mohieddin Jafari |
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[](http://www.rdocumentation.org/packages/CINNA)