# CINNA v1.0.0

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## Deciphering Central Informative Nodes in Network Analysis

Functions for computing, comparing and demonstrating top informative centrality measures within a network.

## Functions in CINNA

Name | Description | |

calculate.centralities | Centrality measure calculation | |

cortex | Macaque Visual Cortex Network | |

drugtarget | Drug Target Network | |

giant.component.extract | Giant component extraction of a graph | |

graph.extract.components | Component extraction of a graph | |

kangaroo | Kangaroo Network | |

misc.extract.components | Component extraction of miscellaneous graph formats | |

pca.centralities | Ranking centrality measure based on contributions | |

print.visualize.association | Print pairwise association between centrality measure's plot into a file | |

print.visualize.correlations | Print centrality correlation plot | |

print.visualize.dendogram | Print dendrogram plot of a graph | |

print.visualize.graph | Print visualized based on centrality values graph | |

tsne.centralities | t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measures | |

proper.centralities | Proper centrality measure representation | |

rhesus | Moreno Rhesus Network | |

visualize.correlations | Correlation plot between centrality values | |

visualize.dendogram | Dendrogram visualization based on a specific centrality measure | |

visualize.association | Pairwise association between centrality values | |

summary.pca.centralities | Summarize PCA result related to centrality measures | |

summary.tsne.centralities | Summarize t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measures | |

visualize.graph | Graph visualization based on a specific centrality measure | |

visualize.heatmap | Heatmap between centrality values | |

print.visualize.heatmap | Print centralities' heatmap | |

print.visualize.pair.correlation | Print pairwise correlation of centrality measure and histogram plot | |

summary.calculate.centralities | Summarize centrality measure calculation results | |

summary.graph.extract.components | Summarize component extraction of a graph | |

visualize.pair.correlation | Pairwise correlation between two centrality values | |

zachary | Zachary Karate Club Network | |

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## Details

Type | Package |

Date | 2017-07-04 |

License | GPL-3 |

Encoding | UTF-8 |

LazyData | true |

RoxygenNote | 6.0.1 |

VignetteBuilder | knitr |

NeedsCompilation | no |

Packaged | 2017-07-15 14:49:16 UTC; MINoOo |

Repository | CRAN |

Date/Publication | 2017-07-15 21:00:03 UTC |

imports | centiserve , circlize , corrplot , dendextend , factoextra , FactoMineR , GGally , ggplot2 , igraph , network , pheatmap , plyr , qdapTools , Rtsne , sna , viridis |

suggests | knitr , rmarkdown |

Contributors | Minoo Ashtiani, Mohieddin Jafari |

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