# CINNA v1.1.2

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## Deciphering Central Informative Nodes in Network Analysis

Functions for computing, comparing and demonstrating top informative centrality measures within a network.

## Functions in CINNA

Name | Description | |

drugtarget | Drug Target Network | |

giant_component_extract | Giant component extraction of a graph | |

print.calculate.centralities | Print computed centrality measures results into a file | |

print.visualize.association | Print pairwise association plot among centrality measures into a file | |

calculate_centralities | Centrality measure calculation | |

cortex | Macaque Visual Cortex Network | |

graph_extract_components | Component extraction of a graph | |

kangaroo | Kangaroo Network | |

misc_extract_components | Component extraction of miscellaneous graph formats | |

pca_centralities | Ranking centrality measure based on contributions | |

print.visualize.pair.correlation | Print pairwise correlation and histogram plots between two centrality measures | |

proper_centralities | Proper centrality measure representation | |

zachary | Zachary Karate Club Network | |

print.visualize.correlations | Print centrality correlation plot | |

print.visualize.dendrogram | Print dendrogram plot of a graph | |

visualize_heatmap | Heatmap plot between centrality measures | |

print.visualize.graph | Print visualized based on centrality values graph | |

print.visualize.heatmap | Print the heatmap plot of centrality measures | |

visualize_dendrogram | Dendrogram plot among centrality measures | |

visualize_graph | Graph visualization based on a specific centrality measure | |

rhesus | Moreno Rhesus Network | |

summary.calculate.centralities | Summarize centrality measure calculation results | |

summary.tsne.centralities | Summarize t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measures | |

visualize_pair_correlation | Pairwise correlation plot between two centrality measures | |

summary.graph.extract.components | Summarize component extraction of a graph | |

summary.pca.centralities | Summarize PCA result related to centrality measures | |

visualize_association | Pairwise association plot between centrality measures | |

visualize_correlations | Correlation plot between centrality measures | |

tsne_centralities | t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measures | |

No Results! |

## Vignettes of CINNA

Name | ||

CINNA.Rmd | ||

bibliography.bib | ||

No Results! |

## Last month downloads

## Details

Type | Package |

Date | 2017-10-23 |

License | GPL-3 |

Encoding | UTF-8 |

LazyData | true |

RoxygenNote | 6.0.1 |

VignetteBuilder | knitr |

NeedsCompilation | no |

Packaged | 2017-10-23 20:50:56 UTC; MinoOo |

Repository | CRAN |

Date/Publication | 2017-10-23 21:11:59 UTC |

imports | centiserve , corrplot , dendextend , factoextra , FactoMineR , GGally , ggplot2 , igraph , network , pheatmap , plyr , qdapTools , Rtsne , sna , viridis |

suggests | knitr , rmarkdown |

Contributors | Minoo Ashtiani, Mohieddin Jafari |

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