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CINNA (version 1.1.4)

Deciphering Central Informative Nodes in Network Analysis

Description

Functions for computing, comparing and demonstrating top informative centrality measures within a network.

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Version

Install

install.packages('CINNA')

Monthly Downloads

425

Version

1.1.4

License

GPL-3

Maintainer

Minoo Ashtiani

Last Published

April 10th, 2018

Functions in CINNA (1.1.4)

print.visualize.pair.correlation

Print pairwise correlation and histogram plots between two centrality measures
visualize_heatmap

Heatmap plot between centrality measures
proper_centralities

Proper centrality measure representation
visualize_association

Pairwise association plot between centrality measures
visualize_correlations

Correlation plot between centrality measures
zachary

Zachary Karate Club Network
visualize_graph

Graph visualization based on a specific centrality measure
visualize_dendrogram

Dendrogram plot among centrality measures
visualize_pair_correlation

Pairwise correlation plot between two centrality measures
summary.tsne.centralities

Summarize t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measures
tsne_centralities

t-Distributed Stochastic Neighbor Embedding (t-SNE) on centrality measures
graph_extract_components

Component extraction of a graph
print.calculate.centralities

Print computed centrality measures results into a file
calculate_centralities

Centrality measure calculation
print.visualize.association

Print pairwise association plot among centrality measures into a file
drugtarget

Drug Target Network
kangaroo

Kangaroo Network
giant_component_extract

Giant component extraction of a graph
misc_extract_components

Component extraction of miscellaneous graph formats
pca_centralities

Ranking centrality measure based on contributions
cortex

Macaque Visual Cortex Network
summary.pca.centralities

Summarize PCA result related to centrality measures
summary.graph.extract.components

Summarize component extraction of a graph
summary.calculate.centralities

Summarize centrality measure calculation results
rhesus

Moreno Rhesus Network
print.visualize.correlations

Print centrality correlation plot
print.visualize.dendrogram

Print dendrogram plot of a graph
print.visualize.graph

Print visualized based on centrality values graph
print.visualize.heatmap

Print the heatmap plot of centrality measures