clin.crc


The example dataset consisits of 10 colon cancer patients, of which 5 had relapse (return of cancer to colon)
and the rest did not relapse. This example dataset is part of the complete dataset used in <cite>CRC</cite>, and
can be accessed via G-DOC Plus at https://gdoc.georgetown.edu.
The column names are described below:


datasets

The CINdex package addresses important area of high-throughput
genomic analysis. It allows the automated processing and analysis of the
experimental DNA copy number data generated by Affymetrix SNP 6.0 arrays or
similar high throughput technologies. It calculates the chromosome instability
(CIN) index that allows to quantitatively characterize genome-wide DNA copy
number alterations as a measure of chromosomal instability. This package
calculates not only overall genomic instability, but also instability in terms
of copy number gains and losses separately at the chromosome and cytoband level.

Yuriy Gusev

CINdex

Chromosome Instability Index

clin.crc function

Format

The example dataset consisits of 10 colon cancer patients, of which 5 had relapse (return of cancer to colon)
and the rest did not relapse. This example dataset is part of the complete dataset used in <cite>CRC</cite>, and
can be accessed via G-DOC Plus at https://gdoc.georgetown.edu.
The column names are described below:

clin.crc: Colon cancer clinical dataset

Description

Usage

Arguments

Value

Format

Details