snpgr.18.auto

This is a probe annotation file for Affymetrix Genome Wide Human SNP Array 6.0. It contains annotation for only the SNP probes in this array and corresponds to hg18 reference genome.The GRanges object contains details about probe name, chromosome number, physical location and strand. The annotation has been filtered to include only those probes that are located in autosomes.More details on how this object was created is provided in the vignette titled "How to prepare Input data" in the CINdex package.

datasets

The CINdex package addresses important area of high-throughput
genomic analysis. It allows the automated processing and analysis of the
experimental DNA copy number data generated by Affymetrix SNP 6.0 arrays or
similar high throughput technologies. It calculates the chromosome instability
(CIN) index that allows to quantitatively characterize genome-wide DNA copy
number alterations as a measure of chromosomal instability. This package
calculates not only overall genomic instability, but also instability in terms
of copy number gains and losses separately at the chromosome and cytoband level.

Yuriy Gusev

CINdex

Chromosome Instability Index

snpgr.18.auto function

Format

This is a probe annotation file for Affymetrix Genome Wide Human SNP Array 6.0. It contains annotation for only the SNP probes in this array and corresponds to hg18 reference genome.

The GRanges object contains details about probe name, chromosome number, physical location and strand. The annotation has been filtered to include only those probes that are located in autosomes.

More details on how this object was created is provided in the vignette titled "How to prepare Input data" in the CINdex package.

snpgr.18.auto: Probe annotation file for Affymetrix Genome Wide Human SNP Array 6.0

Description

Usage

Arguments

Value

Format