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CINmetrics

CINmetrics R package

The goal of CINmetrics package is to provide different methods of calculating Chromosomal Instability (CIN) metrics from the literature that can be applied to any cancer data set including The Cancer Genome Atlas.

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Version

Install

install.packages('CINmetrics')

Monthly Downloads

198

Version

0.1.0

License

GPL-3

Maintainer

Vishal Oza

Last Published

August 2nd, 2021

Functions in CINmetrics (0.1.0)

countingBreakPoints

countingBreakPoints
countingBaseSegments

countingBaseSegments
fga

Fraction Genome Altered
tai

Total Aberration Index
CINmetrics

CINmetrics
taiModified

Modified Total Aberration Index
cna

Copy Number Aberration
maskCNV_BRCA

Breast Cancer Data from TCGA Data Release 25.0 GDC Product: Data Release Date: July 22, 2020 Masked Copy Number variation data for Breast Cancer for 10 unique samples selected randomly from TCGA